UNSW NMR

All things magnetic at UNSW. A blog for users of the NMR Facility and anyone interested in magnetic resonance.

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Double Solvent Peak Suppression

Posted by on May 1st, 2017 · Uncategorized

Solvent suppression comes in many forms, the most common is when a single peak (usually from the protonated fraction of your solvent) is removed from the spectrum. Presaturation is the method where a low power long pulse is applied at the frequency to be obliterated. Gradient based techniques where the magnetization due to the offending solvent is “scattered” while in the transverse or XY plane, this results in a net zero magnetization. What is common to both of these methods is that they both on resonance. This means that the centre field is set to frequency of interest, this is not an absolute requirement and offsets can be used to retain a reasonable sweep width. In the case of suppressing a residual peak from D2O the centre would be set to approximately 4.7 ppm which is conveniently in the middle of the proton window. However, if the residual peak was from dimethyl sulfoxide (DMSO), located at 2.5 ppm then the an offset would be required or an extremely large sweep width could be used to compensate.

Another problem that arises in solvent like DMSO is the second solvent peak, here it is actually H2O in the DMSO. Try as you might your DMSO will always be a little wet and sometimes a lot wet depending on how it has been stored. It would be nice to do something like presaturation to get rid of both solvent peaks. Luckily a number of methods are available to do multiple solvent peak suppression. Here I will describe how to use the systems set up for liquid chromatography NMR (LC-NMR). Bruker have developed a suite of experiments to allow for the acquisition of NMR data after LC separation using non or minimally deuterated solvents. The experiments work perfectly well with fully deuterated solvents and have the advantage of being preconfigured for 1H, COSY, TOCSY and HSQC. Generally the experiments also come set up to do carbon decoupling which is a necessity for the non deuterated solvent systems as the carbon satellites would be very noticeable under these conditions. Luckily this is not likely to be a problem when using normal deuterated NMR solvents.

The double presat Bruker parameter set is either LC1D12 or LC1D12GP. After loading the parameter set go through the acquisition parameters and set them according to you sample just as you would if acquiring a regular proton experiment. When ready to acquire type xaua au_lc1d this is the magic of this method. The preparation program quickly obtains a 1H spectrum and determines the chemical shift of the two largest peaks in the spectrum. This is actually the Achilles heal of the method, if the peaks that are to be suppressed are not in fact the two largest in the spectrum then the experiment will fail. Once the preparation program obtains the chemical shifts to be suppressed it creates a custom shape pulse that will specifically saturate the two frequencies in question.

The LC-NMR manual has a list of all the different experiments that Bruker have prepared for double supression. The 2D experiments can be prepared for use in exactly the same way with the minor variation that the preparation program is xaua au_lc2d.

These experiments can also be implemented using automation without any further modifications.

At UNSW the four experiment types named about have been implemented on all instruments and have the suffix “lcpr” to differentiate them from other solvent suppression routines.

The Heteronuclear 2 Bond Correlation experiment

Posted by on May 1st, 2017 · Uncategorized

Everyone should be familiar with the HMBC or Heteronuclear Multiple Bond Correlation (HMBC) experiment. The HMBC provides 1H – 13C correlations over two, three or four bonds and is an extremely useful experiment in the toolbox for structural determination. The one bond Heteronuclear Single Quantum Coherence (HSQC) experiment, 1J 1H-13C and the Correlation Spectroscopy (COSY), 3J 1H-1H experiment make up the standard complement of experiments used when trying to solve an unknown structure by NMR.

Another experiment that should be added to the mix is the The Heteronuclear 2 Bond Correlation experiment (H2BC)1. As the name suggests the H2BC only observes two bond correlations. It achieves this by using the 3J 1H-1H COSY interaction combined with 1J 1H-13C HMQC (Heteronuclear Multiple Quantum Coherence). The net result is that the all two bond interactions are observed while excluding the longer range interactions. On the positive side of the ledger this experiment is much more sensitive that the HMBC saving time and expense. On the negative side, two bond correlations to carbons that lack hydrogen atoms will not be observed as they do not have a COSY interaction that allows the H2BC to work.

For a more complete explanation of the H2BC experiment go to the excellent NMR Blog by Glenn Facey https://u-of-o-nmr-facility.blogspot.com.au/

1. Nyberg, Duus, Sorensen.  J. Am. Chem. Soc. 127, 6154 (2005).

MNova YouTube Channel

Posted by on June 7th, 2016 · Uncategorized

Check out the Mestrelab YouTube channel for pointers on using the MNova software. If you want to try out the software come down to the processing lab and have a look at a bunch of the features that MNova offers.

https://www.youtube.com/channel/UCf3MVnd3XZflv0acvTv14ww

Functionality such as quantitative NMR, residual dipolar coupling analysis and small molecule structure analysis are covered on the YouTube channel. Standard analysis of 1D and 2D spectra are also available so give it a try.

How to add a directory to Topspin

Posted by on May 10th, 2016 · Uncategorized

Here is a little movie that will show you how to add directories to the data browser in Topspin.

Open the following link and then start by right clicking in the data browser

Adding Directory

Of course you must already have Topspin installed, downloaded and setup Filezilla in order for this to work.

Hope this helped.

Don

TopSpin for academia

Posted by on April 14th, 2016 · Uncategorized

Big changes have happened at Bruker when it comes to the Topspin software.

Taking affect immediately a processing only version of Topspin is available within academia for free.

The following link will take you to a Bruker website where you can register to download Topspin. The processing only software is available on all platforms (Windows, Mac and Linux).

https://www.bruker.com/nc/service/support-upgrades/software-downloads/nmr/free-topspin-processing.html

The free version of Topspin is 3.5 patch level 5 if you have questions about installing Topspin send an email to the NMR Facility and we will try to help you though the process.

Filezilla from https://filezilla-project.org/ (the client version) is the easiest and free way to move your data from our server to your computer (Yes you must do this for Topspin to work on your computer).

The FTP login info is on the booking system. Login and go to My Dashboard –> My Home –> Access Experimental Data then click on link to get login info.

Filezilla Site

Filezilla Site

 

Just in case you are using a Mac, please remember to change the Transfer Type to Binary otherwise the data will get scrambled.

Residual dipolar coupling talks

Posted by on April 30th, 2014 · Uncategorized

Last October at the Asia Pacific NMR conference in Brisbane Ad Bax gave two talks on the use and misuse of residual dipolar couplings for structural determination. These lectures were recorded and have been put on-line via the ANZMAG YouTube channel.

https://www.youtube.com/watch?v=cjXgUPsJjgQ

https://www.youtube.com/watch?v=bmx56Fjv8Hc

Starting at the top end but it is worth it.

Hello NMR!

Posted by on October 30th, 2011 · Uncategorized

Thought I should start a blog about all things NMR. I’ve been somewhat inspired by the excellent NMR blog done by Glenn Facey at the University of Ottawa in Canada. Have a look at http://u-of-o-nmr-facility.blogspot.com. Hopefully this will be a semi regular place where I can help keep users of the NMR Facility at UNSW up to date about stuff happening within the facility but also for anyone interested in NMR from the wider community.

See ya,

Don